Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015881766.1_cds_XP_016437882.1_33601
CDS Infomation

[gene=LOC107763887] [db_xref=GeneID:107763887] [protein=exocyst complex component SEC5A-like] [protein_id=XP_016437882.1] [location=join(5815..6252,7845..7996,8091..8185,9148..9342,9437..9564,9711..9869,10709..10813,12277..12351,13175..13312,13404..13595,15711..15854,16740..16866,16940..17150,19880..19995,20079..20310,20680..20773,21209..21286,21361..21417,21524..21673,21917..22132,22382..22603)] [gbkey=CDS]
Sequence

ATGTCAAGCGACAGTGAGGACGAAGACGAGCTCTTACAGATCGCATTGCAGGAACAAGCT
CAACGCAACATCAATTACCAGAAACCGGTTCATCAACCTTCTAAACCGGTTCGCAACTTC
GTTCAGCCGCCATCGCAGCCCAACTCGAGAACCGGCGCTACCGGTAGTAATACGGCGGGG
AGAAAGAACACTAACGCTGCTGCGATGCCGAAGAGCAGTAACAAGAACAGTAATCAGCAG
CGGAAGTCTGTGGAAGATGACGATGATTCGGAAATCGAAATGCTGAGTATATCATCGGGC
GATGAGGATTCGTCCAAGGATCGCGGGTTCGGGTCGAGGAATCGGGTAGCAAGTGGTGGA
GGGAGAGCTGCACACGAGGATGATGGATTGTGGGATGGTGGTGAGCCTGATTGCTGGAAG
CGTGTTGATGAATCTGAGCTAAGACGCAGAGTTCGTGAGATGAGGGAGGCAAGAGTGGTT
CCAACCACTCAAAAGCCTGAGCCAGAGAAGACAGCTGTACCACAAAAAGCTCTTAATAAT
TTGCAGTCTTTTCCTCGTGGCATGGAATGCATCGATCCTCTGAAGTTGGGGATAGTTGAC
AACAGAACATTACGGTTAATCAGTGAGACCTTACAAAGTTCCCCGTCCATAGGCGACAGA
GATCATTTAGACCCCAAAGTTCGTGAGAGGTTGAATTACTTTTCTGAGAAATTTGACCCG
AAGTTGTTTCTGTCTCGGATCCACCAAGACACTAGCGCTTCAGAGTTAGAATCAGGTGCT
CTTGCTGTAAAGACTGATCTTAAAGGACGTACACTGCAGAAAAAACAGTTGGTTAAAGAA
AATTTTGACTGCTTTGTGTCCTGCAAAACAACAATTGATGATATTGAATCAAAGTTAAGA
CGGATTGAGGAAGACCCTGAAGGTTCTGGAACCTCTCACTTATTTAATTGTATCGAAGGA
GTTAGTTCAATTGCTAATCGTGCTTTTGGGCCACTATTTGAAAGACAGGCTCAAGCTGAG
AAGATAAGATCTGTTCAAGGAATGCTGCAGAGGTTCCGAACACTATTTAACTTGCCCAGC
ACGATTCGTGAGAGCATTGGTAGTGGTGAATATGACCTGGCAGTCAGGGAGTACAGGAAA
GCAAAGTCAATCGTTCTGCCTTCTCATGTTGGAATTTTGAAGCGTGTGCTTGAGGAGGTT
GAAAGAGTTATGCAAGAATTTAAAAGCAAGCTTTATAAGTCTCTGGAAGATCCTCAGATT
GACCTAACAAATCTTGAAAATAATGTGAGACTCTTGTTGGAGTTGGAACCCGAATCAGAT
CCTGTGTGGCACTATTTGAATATACAGAACCACAGAATCCGAGGTTTGCTTGAGAAATGC
ACTTTGGATCATGAATCAAGGACGGAAAATTTTCGGAATGAGATGCATGAAAGAGCTTTA
TCTGATGCAAAATGGAGGCAAATTCAGCAAGATTTGAACCATTCTTCAGATGTTGATTAC
TCTGATTCTCATGAAAATACATATTTGCCGGGTGATTCACAACAAGTGGAATTTAGTGGT
GAAAAGGTTGATGCTCTCAGAGGAAGTTATATAAGGAGGTTAACTGCTGTAATTATCCAT
CATGTGCCTGCCTTTTGGAGAGTAGCTATTGCAGTTTTCAGCGGGAAATTTGCGAAGTCT
TCTCAAGTATCCTCTGATTCAAATATGAATGCCTCTGCGAACAAAATTGAAGAAAAAGCG
GGAGATGGGAAGTACTCAAATCATTCACTTGATGAAGTTGCTGGGATGGTTCGCAGTACT
ATATCAGCTTATGAATCCAAGGTCCAGAATGCATTTGGGGATCTTGAAGAATCAAATATT
CTTTGCTCATACATGAGTGATGCCATAAAGGAGATATCCAAAGCATGTCAAGCTTTTGAA
GCAAAAGAATCAGCGCCTTCAGTTGCTATTGCAGCACTGCGAACACTTCAGTGTGAGGTC
TCAAAAGTTTACATATTGAGGCTCTGTTCATGGATGCGGACTACAGTTGAAGAGATATCA
AAAGATGAATCCTGGGTCCCAGTATCTATTTTAGAAAGGAATAGATCTCCATATACCATT
TCTTCCTTGCCTTTGGCTTTCCATTCAATTATCACATCTGCAATGGATCAGATCAATTCA
ATGATTGTGTCTTTGCGGAATGAGGCGATGAAGTCAGAAGACATATTCTTGCAGCTTCAA
GGAATCCAGGAATCTGTTAGACTTGCCTTCTTGAATTGTTTGCTGAATTTTGCTGGTCAT
CTGGAGCAAATTGGAAGTCAGCTTAACCTGAATAAATCCAACAAAGAAAGTCCATATTTT
CAAAATGGATATCTTGAACCAGAAGAAAAATCATCTGATCCCCTACCAGGAAGTATTGTT
GATCCACTTCGACAGCTGCTGATGGTTCTAAGTAATATTGGATATTGTAAAGATGAACTT
GCTCGTGAATTGTACTGCAAATACAAACAAATTTGGCTGCAGTCGAGGGGTAAGGATGAA
GAGGACAGTGATATCCAAGAATTGATTATGTCTTTTGCTGGGCTTGAAGAGAAGGTCCTT
GAACAGTACACTTTTGCAAAGACCAATTTGATTAGAACAGCAGCTATAAACTATTTCTTG
GATGGCGGAGTGCAATGGGGTGCTGCGCCAGCAGTTAAGGGTGTGCGAGATGCTGCTGTG
GAATTGCTGCACACTCTAGTAGCTGTACATGCAGAGGTCTTCGCTGGTTGTAAGCCTCTA
CTGGACAAGACGCTTGGTATTCTTGTTGAAGGCTTAATTGATACTTTCCTAAGTCTTTTC
CATGAAAATCAAGACAAAGATCTCAAAGCATTAGACGCGAATGGCTTTTGCCAGCTTATG
CTTGAGCTTGATTACTTCGAGACCATATTGAATCCTTATTTTACACATGAAGCAAGGGAG
TCGCTGAAAACATTACAAGGGGTCCTCTTAGAGAAAGCAACAGAGTGTGTTGCTGAGGTT
ACTGAGACTCCAACTCACAGCCGCCGGCCGACACGTGGAAGTGATGATGTATTTCTGGAT
GACCGGCAACAAGGGATGACTGTATCACCGGATGACTTGATTGCTCTTGCCCAGCAGTAT
AGTTCTGAGCTACTTCAATCTGAACTTGAGAGGACTAGAATCAATACAGCATGCTTTGTG
GAATCAATTCCCCTGGACTCTGTTCCAGAATCAGCAAAGGCAGCATATGCTTCTTTTAGA
GGACCTATGGATTCTCCCAGTAGAAATTTTAGGGGATCACAACATATTGGATCCCCAAGT
TTCTCCAGGCCAAGACGTAGATAA

Peptide Sequence

PEP ID

XP_016437882.1
PEP Infomation

PREDICTED: exocyst complex component SEC5A-like [Nicotiana tabacum]
Sequence

MSSDSEDEDELLQIALQEQAQRNINYQKPVHQPSKPVRNFVQPPSQPNSRTGATGSNTAG
RKNTNAAAMPKSSNKNSNQQRKSVEDDDDSEIEMLSISSGDEDSSKDRGFGSRNRVASGG
GRAAHEDDGLWDGGEPDCWKRVDESELRRRVREMREARVVPTTQKPEPEKTAVPQKALNN
LQSFPRGMECIDPLKLGIVDNRTLRLISETLQSSPSIGDRDHLDPKVRERLNYFSEKFDP
KLFLSRIHQDTSASELESGALAVKTDLKGRTLQKKQLVKENFDCFVSCKTTIDDIESKLR
RIEEDPEGSGTSHLFNCIEGVSSIANRAFGPLFERQAQAEKIRSVQGMLQRFRTLFNLPS
TIRESIGSGEYDLAVREYRKAKSIVLPSHVGILKRVLEEVERVMQEFKSKLYKSLEDPQI
DLTNLENNVRLLLELEPESDPVWHYLNIQNHRIRGLLEKCTLDHESRTENFRNEMHERAL
SDAKWRQIQQDLNHSSDVDYSDSHENTYLPGDSQQVEFSGEKVDALRGSYIRRLTAVIIH
HVPAFWRVAIAVFSGKFAKSSQVSSDSNMNASANKIEEKAGDGKYSNHSLDEVAGMVRST
ISAYESKVQNAFGDLEESNILCSYMSDAIKEISKACQAFEAKESAPSVAIAALRTLQCEV
SKVYILRLCSWMRTTVEEISKDESWVPVSILERNRSPYTISSLPLAFHSIITSAMDQINS
MIVSLRNEAMKSEDIFLQLQGIQESVRLAFLNCLLNFAGHLEQIGSQLNLNKSNKESPYF
QNGYLEPEEKSSDPLPGSIVDPLRQLLMVLSNIGYCKDELARELYCKYKQIWLQSRGKDE
EDSDIQELIMSFAGLEEKVLEQYTFAKTNLIRTAAINYFLDGGVQWGAAPAVKGVRDAAV
ELLHTLVAVHAEVFAGCKPLLDKTLGILVEGLIDTFLSLFHENQDKDLKALDANGFCQLM
LELDYFETILNPYFTHEARESLKTLQGVLLEKATECVAEVTETPTHSRRPTRGSDDVFLD
DRQQGMTVSPDDLIALAQQYSSELLQSELERTRINTACFVESIPLDSVPESAKAAYASFR
GPMDSPSRNFRGSQHIGSPSFSRPRRR

Transcript Sequence

Gene sequence data has not been registered.